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Overlapping pair comparison
Window comparison
Matrix comparison
Ref-to-all comparison
Newick trees:
Examples:
#1
#2
#3
#4
Referenced newick trees:
Rooted metrics
Triples - ( Triples metric )
RFCluster - ( Robinson-Foulds metric based on clusters )
MatchingPair - ( Matching Pair metric )
NodalSplittedWeighted - ( Weighted Nodal Splitted metric with L2 norm )
GeoRooted - ( Geodesic Rooted metric )
NodalSplitted - ( Nodal Splitted metric with L2 norm )
MatchingCluster - ( Matching Cluster metric )
MAST - ( Rooted Maximum Agreement Subtree distance )
RFClusterWeighted - ( Weighted Robinsin Foulds metric based on clusters )
CopheneticL2WeightedMetric - ( Weighted Cophenetic Metric with L2 norm )
CopheneticL2Metric - ( Cophenetic Metric with L2 norm )
Unrooted metrics
RFWeighted - ( Weighted Robinsin Foulds distance )
Quartet - ( Quartet distance )
PathDiffernce - ( Path difference distance )
RF - ( Robinson-Foulds distance )
MatchingSplit - ( Matching Split distance )
UMAST - ( Unrooted Maximum Agreement Subtree distance )
GeoUnrooted - ( Geodesic Unrooted distance )
Other options
Normalized distances
Prune trees
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Zero weights allowed
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